Index

A

add_complex() (in module homology) add_node() (graph.Graph method)

add_tuples() (in module util) all_simplexes_found() (in module homology) average_tuples() (in module util)

C

connect() (graph.Node method) connect_to_neighbours() (in module graph)

create_distance_matrix() (in module util) create_grid() (in module graph)

D

disconnect() (graph.Node method)

F

filtered_complexes_to_tuples() (in module homology) first_dimension() (in module reeb) fit() (gng.GNG method) (homology.HbdscanRips method) (homology.PersistenceImage method) (homology.PersistenceLandscape method) (homology.Rips method) (reeb.Reeb method) (som.SOM method)

forward() (neural_net.PersLay method) (neural_net.TopAELoss method) (neural_net.TopologicalAutoEncoder method)

G

gaussian_prob() (homology.PersistenceImage method) get_creator_simplex_indices() (in module homology) get_edges() (graph.Graph method) get_nth_neighbours() (graph.Node method) gng module

GNG (class in gng) graph module Graph (class in graph)

H

HbdscanRips (class in homology)

homology module

I

is_valid_simplex() (in module homology)

M

module gng graph homology neural_net reeb som util

multiply_tuple() (in module util)

N

neural_net module

new_complexes_created() (in module homology) Node (class in graph)

P

PersistenceImage (class in homology)

PersistenceLandscape (class in homology) PersLay (class in neural_net)

R

rearrange_nodes() (reeb.Reeb method) reduce_columns() (in module homology) reeb module

Reeb (class in reeb) remove_node() (graph.Graph method) Rips (class in homology)

S

second_dimension() (in module reeb) simple_neighbourhood_function() (in module som) simplex_exists() (in module homology)

som module SOM (class in som)

T

to_index_tuples() (in module homology) TopAELoss (class in neural_net) TopologicalAutoEncoder (class in neural_net) training (neural_net.PersLay attribute) (neural_net.TopAELoss attribute) (neural_net.TopologicalAutoEncoder attribute) transform() (gng.GNG method) (homology.HbdscanRips method) (homology.PersistenceImage method) (homology.PersistenceLandscape method) (homology.Rips method) (reeb.Reeb method) (som.SOM method)

transform_to_birth_persistence() (in module homology) transform_to_mid_half_life() (in module homology)

U

util module